※Citation

For publication of results please cite the following article:


IBS: an illustrator for the presentation and visualization of biological sequences. Wenzhong Liu, Yubin Xie, Jiyong Ma, Xiaotong Luo, Peng Nie, Zhixiang Zuo, Urs Lahrmann, Qi Zhao, Yueyuan Zheng, Yong Zhao, Yu Xue* and Jian Ren*. Bioinformatics (2015) 31(20):3359-3361.

Abstract | Full Text | PDF | Supplementary information

 

 

DOG 1.0: Illustrator of Protein Domain Structures.
Jian Ren
, Longping Wen, Xinjiao Gao, Changjiang Jin, Yu Xue and Xuebiao Yao. Cell Research (2009) 19:271–273.

Abstract | Full Text | PDF | Supplementary information




※ IBS/DOG cited by >140 publications :

1.         Pugh TJ, et al. Nature.2012;488(7409):106-110.[PMID: 22820256]

2.         Sirohi D, et al. Science.2016;352(6284):467-470.[PMID: 27033547]

3.         Yehia L, et al. American Journal of Human Genetics.2015;97(5):661-676.[PMID: 26522472]

4.         Lee B, et al. PNAS.2015;112(17):E2156-E2165.[PMID: 25825759]

5.         Liu JR, et al. PNAS.2015;112(35):E4864-E4873.[PMID: 26283369]

6.         de Lucas S, et al. Nucleic Acids Research.2014;42(7):4516-4526.[PMID: 24470147]

7.         Tian QN, et al. Nucleic Acids Research.2015;43(5):2980-2990.[PMID: 25722375]

8.         Cremona CA, et al. Oncogene.2014;33(26):3351-3360.

9.         Nir R, et al. Plos Genetics.2012;8(3).[PMID: 22479211]

10.         Zuccaro A, et al. Plos Pathogens.2011;7(10).[PMID: 22022265]

11.       Aguilar-Martinez JA, et al. Plant Physiology.2015;167(2):424-442.[PMID: 25524441]

12.       Johnson C, et al. Molecular & Cellular Proteomics.2011;10(10).[PMID: 21725060]

13.       Ren J, et al. Molecular & Cellular Proteomics.2010;9(4):623-634.[PMID: 19995808]

14.       St John FJ, et al. Acta Crystallographica Section D-Biological Crystallography.2014;70:2950-2958.[PMID: 25372685]

15.       Xu BY, et al. Acta Crystallographica Section D-Biological Crystallography.2014;70:3013-3022.[PMID: 25372690]

16.       Pigors M, et al. Journal of Investigative Dermatology.2012;132(10):2422-2429.[PMID: 22622422]

17.       Kuo YY, et al. Haematologica.2014;99(12):1799-1807.[PMID: 25193961]

18.       Olivares C, et al. Pigment Cell & Melanoma Research.2009;22(6):750-760.[PMID: 19735457]

19.       Stewart MJ, et al. Molecular Ecology Resources.2015;15(4):953-966.[PMID: 25494938]

20.       Liu S, et al. Rna Biology.2013;10(9):1501-1510.[PMID: 24004908]

21.       Zhang HT, et al. Biochimica Et Biophysica Acta-Molecular Cell Research.2016;1863(2):335-346.[PMID: 26658161]

22.       Ogaki K, et al. Molecular Neurodegeneration.2014;9.[PMID: 25373618]

23.       Shankar SR, et al. Epigenetics.2013;8(1):16-22.[PMID: 23257913]

24.       Bao CC, et al. Scientific Reports.2015;5.[PMID: 26592767]

25.       Cao DD, et al. Scientific Reports.2016;6.[PMID: 26821753]

26.       Vernes SC. Scientific Reports.2014;4.[PMID: 24642956]

27.       Yang KL, et al. Scientific Reports.2016;6.[PMID: 26979781]

28.       Thomas VC, et al. Molecular Microbiology.2009;72(4):1022-1036.[PMID: 19400795]

29.       Glousker G, et al. British Journal of Haematology.2015;170(4):457-471.[PMID: 25940403]

30.       Toledo RA, et al. Endocrine-Related Cancer.2015;22(1):65-76.[PMID: 25425582]

31.       Droppelmann CA, et al. Neurobiology of Aging.2013;34(1):248-262.[PMID: 22835604]

32.       Pietrosemoli N, et al. Plos Computational Biology.2013;9(7).[PMID: 23874186]

33.       Wong WC, et al. Plos Computational Biology.2010;6(7).[PMID: 20686689]

34.       Chiu TY, et al. Biochemical Journal.2015;472:43-54.[PMID: 26338998]

35.       Jiang XW, et al. Journal of Virology.2015;89(22):11457-11472.[PMID: 26339063]

36.       Li FY, et al. Bioinformatics.2015;31(9):1411-1419.[PMID: 25568279]

37.       Liu WZ, et al. Bioinformatics.2015;31(20):3359-3361.[PMID: 26069263]

38.       Deng XY, et al. Journal of Biological Chemistry.2016;291(11):5740-5752.[PMID: 26797133]

39.       Jiang YL, et al. Journal of Biological Chemistry.2011;286(50):43004-43012.[PMID: 22013074]

40.       Musayev FN, et al. Journal of Biological Chemistry.2015;290(46):27487-27499.[PMID: 26370092]

41.       Ostrowski A, et al. Journal of Biological Chemistry.2015;290(51):30291-30305.[PMID: 26491011]

42.       Qin XJ, et al. Journal of Biological Chemistry.2014;289(29):20359-20369.[PMID: 24898252]

43.       Xu J, et al. Journal of Biological Chemistry.2012;287(25):20942-20956.[PMID: 22544749]

44.       Tinti M, et al. Open Biology.2014;4(5).[PMID: 24941500]

45.       Redpath GMI, et al. Molecular Biology of the Cell.2014;25(19):3037-3048.[PMID: 25143396]

46.       Dabrowska-Bronk J, et al. Molecular Plant Pathology.2015;16(4):334-348.[PMID: 25131407]

47.       Li R, et al. Journal of Neurochemistry.2014;128(2):315-329.[PMID: 24117863]

48.       Sikkeland J, et al. Molecular and cellular endocrinology.2016;425:26-36.[PMID: 26911931]

49.       Kim J, et al. Chemical Research in Toxicology.2014;27(10):1837-1852.[PMID: 25162224]

50.       Song I, et al. Chemical Research in Toxicology.2014;27(5):919-930.[PMID: 24725253]

51.       Yeom M, et al. Chemical Research in Toxicology.2016;29(3):367-379.[PMID: 26914252]

52.       van der Velden J, et al. Experimental Dermatology.2015;24(4):285-289.[PMID: 25644735]

53.       Szczecinska W, et al. British Journal of Dermatology.2014;171(5):1206-1210.[PMID: 24628291]

54.       Adamson KJ, et al. Bmc Genomics.2015;16.[PMID: 25884396]

55.       Andrade LF, et al. Bmc Genomics.2011;12.[PMID: 21548963]

56.       Guo RR, et al. Bmc Genomics.2013;14.[PMID: 23945092]

57.       Li S, et al. Bmc Genomics.2016;17.[PMID: 26742635]

58.       Malhotra S, et al. Bmc Genomics.2014;15.[PMID: 25534245]

59.       Stewart MJ, et al. Bmc Genomics.2014;15.[PMID: 25277059]

60.       Jin XL, et al. Febs Journal.2011;278(1):78-84.[PMID: 21078127]

61.       Nartey W, et al. Febs Journal.2015;282(23):4620-4638.[PMID: 26402142]

62.       Luo M, et al. Journal of Molecular Biology.2010;398(4):614-622.[PMID: 20347849]

63.       Liu X, et al. Bmc Plant Biology.2012;12.[PMID: 22894565]

64.       Zhou T, et al. Journal of Proteomics.2015;126:296-302.[PMID: 26021710]

65.       Lambert LA. Biochimica Et Biophysica Acta-General Subjects.2012;1820(3):244-255.[PMID: 21693173]

66.       Hu Y, et al. Frontiers in Plant Science.2015;6.[PMID: 26442049]

67.       Novak D, et al. Frontiers in Plant Science.2016;6.[PMID: 26779221]

68.       Yang YJ, et al. Frontiers in Plant Science.2015;6.[PMID: 26150823]

69.       Zhao LM, et al. Frontiers in Plant Science.2015;5.[PMID: 25610445]

70.       Fernandes AM, et al. Plos One.2013;8(9).[PMID: 24073233]

71.       Hosp J, et al. Plos One.2012;7(7).[PMID: 22792236]

72.       Keeratijarut A, et al. Plos One.2015;10(8).[PMID: 26263509]

73.       Liew LC, et al. Plos One.2013;8(10).[PMID: 24147010]

74.       Liu SY, et al. Plos One.2012;7(1).[PMID: 22276181]

75.       Liu ZX, et al. Plos One.2011;6(4).[PMID: 21533053]

76.       Lopez-Falcon B, et al. Plos One.2014;9(12).[PMID: 25437195]

77.       Mughal N, et al. Plos One.2013;8(5).[PMID: 23667520]

78.       Yu SS, et al. Plos One.2014;9(12).[PMID: 25463447]

79.       Smith RC, et al. Malaria Journal.2014;13.[PMID: 25115675]

80.       Saikhedkar N, et al. Insect Biochemistry and Molecular Biology.2015;64:51-59.[PMID: 26210259]

81.       Ma J, et al. Planta.2013;238(6):1081-1093.[PMID: 24002549]

82.       Du Y, et al. Journal of Structural Biology.2011;174(1):252-257.[PMID: 21055474]

83.       Kaur G, et al. Journal of Structural Biology.2015;190(1):38-46.[PMID: 25721219]

84.       Toh YK, et al. Journal of Structural Biology.2011;173(2):271-281.[PMID: 21134462]

85.       Licznerska K, et al. Oxidative Medicine and Cellular Longevity.2016.[PMID: 26798420]

86.       Mori T, et al. Febs Letters.2012;586(11):1570-1583.[PMID: 22673569]

87.       Wang T, et al. Febs Letters.2012;586(19):3044-3050.[PMID: 22846708]

88.       Wang XN, et al. Fungal Genetics and Biology.2015;81:221-228.[PMID: 25847004]

89.       Zhong ZH, et al. Fungal Genetics and Biology.2015;83:58-67.[PMID: 26318870]

90.       Wang GP, et al. Plant and Soil.2015;386(1-2):205-221.

91.       Chylek LA, et al. Molecular Biosystems.2011;7(10):2779-2795.[PMID: 21647530]

92.       Peysselon F, et al. Molecular Biosystems.2011;7(12):3353-3365.[PMID: 22009114]

93.       Palma-Guerrero J, et al. Eukaryotic Cell.2015;14(3):265-277.[PMID: 25595444]

94.       Werner GDA, et al. Marine Biotechnology.2013;15(2):230-243.[PMID: 22865210]

95.       Geng F, et al. Journal of agricultural and food chemistry.2015;63(37):8209-8215.[PMID: 26322443]

96.       Canueto J, et al. Journal of the European Academy of Dermatology and Venereology.2016;30(3):477-480.[PMID: 25510201]

97.       Liu Y, et al. Journal of Biochemistry.2016;159(4):471-479.[PMID: 26634445]

98.       Nogueira-Ferreira R, et al. Archives of Biochemistry and Biophysics.2013;538(2):64-70.[PMID: 23938875]

99.       Xu HL, et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine.2010;2(6):708-733.[PMID: 20890967]

100.       Nag S, et al. Cytoskeleton.2013;70(7):360-384.[PMID: 23749648]

101.     Creamer MS, et al. Bmc Systems Biology.2012;6.[PMID: 22913808]

102.     Saw WG, et al. Bioscience Reports.2013;33:361-369.[PMID: 23458223]

103.     Li B, et al. Bmc Cell Biology.2012;13.[PMID: 22827267]

104.     Wang L, et al. Molecular Genetics and Genomics.2015;290(3):825-846.[PMID: 25429734]

105.     Yuen CYL, et al. Molecular Genetics and Genomics.2016;291(1):455-469.[PMID: 26300531]

106.     Mahjoubi H, et al. Functional & Integrative Genomics.2015;15(6):717-728.[PMID: 26071212]

107.     Fernandez JA, et al. General and Comparative Endocrinology.2015;213:16-23.[PMID: 25708429]

108.     Miller RE, et al. Current Rheumatology Reports.2013;15(8).[PMID: 23926636]

109.     Obeidova L, et al. Bmc Medical Genetics.2015;16.[PMID: 26695994]

110.     Li WF, et al. Tree Genetics & Genomes.2014;10(1):223-229.

111.     Li XQ, et al. Tree Genetics & Genomes.2015;11(1).

112.     Ford DJ, et al. Cancer Genetics.2015;208(5):178-191.[PMID: 25794446]

113.     Li XQ, et al. Plant Physiology and Biochemistry.2013;71:268-282.[PMID: 23978559]

114.     Cheng CX, et al. International Journal of Molecular Sciences.2013;14(12):24169-24186.[PMID: 24351809]

115.     Wang H, et al. International Journal of Molecular Sciences.2014;15(4):5730-5748.[PMID: 24705465]

116.     Xue Y, et al. Current Protein & Peptide Science.2010;11(6):485-496.[PMID: 20491621]

117.     Xue Y, et al. Protein Engineering Design & Selection.2011;24(3):255-260.[PMID: 21062758]

118.     Nazarian S, et al. Journal of Microbiological Methods.2012;90(1):36-45.[PMID: 22525194]

119.     Bonnet C, et al. Gene.2013;527(2):537-540.[PMID: 23850727]

120.     Cao DY, et al. Gene.2014;550(2):230-237.[PMID: 25149677]

121.     Li XY, et al. Gene.2014;548(1):119-125.[PMID: 25020260]

122.     Li YL, et al. Gene.2015;561(2):225-234.[PMID: 25688881]

123.     Xue K, et al. Gene.2014;539(1):111-116.[PMID: 24462755]

124.     Ali R, et al. Archaea-an International Microbiological Journal.2015.[PMID: 26819569]

125.     Juhsz C, et al. Physiological and Molecular Plant Pathology.2015;92:59-69.

126.     Zuo YS, et al. Physiological and Molecular Plant Pathology.2014;87:9-18.

127.     Kim SJ, et al. Bmc Biochemistry.2013;14.[PMID: 24021022]

128.     Li XG, et al. Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology.2015;187:110-120.[PMID: 26005205]

129.     Tamuli R, et al. Journal of Basic Microbiology.2011;51(2):120-128.[PMID: 21077122]

130.     Gao Y, et al. Comparative and Functional Genomics.2012.[PMID: 22924025]

131.     Jiang QT, et al. Genetica.2011;139(10):1283-1292.[PMID: 22290495]

132.     Qi PF, et al. Genetica.2013;141(7-9):303-310.[PMID: 23892918]

133.     Papaefthimiou D, et al. Biologia Plantarum.2012;56(4):683-692.

134.     Silva LL, et al. Memorias Do Instituto Oswaldo Cruz.2011;106(7):864-877.[PMID: 22124560]

135.     Papaefthimiou D, et al. Acta Physiologiae Plantarum.2012;34(3):1187-1198.

136.     Wu TF, et al. Asian Pacific Journal of Cancer Prevention.2012;13(10):5137-5142.[PMID: 23244124]

137.     Sharma R, et al. Computers in Biology and Medicine.2015;56:67-81.[PMID: 25464349]

138.     Qi PF, et al. Journal of Genetics.2014;93(1):35-41.[PMID: 24840821]

139.     Ishimori M, et al. Journal of the Japanese Society for Horticultural Science.2014;83(2):172-180.

140.     Tian HF, et al. Biologia.2015;70(9):1254-1262.

141.     Zsamboki J, et al. Central European Journal of Biology.2013;8(7):633-645.

142.     Naveed M, et al. Brazilian Journal of Microbiology.2014;45(2):603-611.[PMID: 25242947]

143.     Cao D, et al. Plant science : an international journal of experimental plant biology.2016;247:1-12.[PMID: 27095395]

144.     Greif PA, et al. Haematologica-the Hematology Journal.2012;97(12):1909-1915.[PMID: 22689681]

145.     Hirvonen MJ, et al. Febs Open Bio.2013;3:83-88.[PMID: 23772379]

146.     Mao M, et al. Basement Membranes.2015;61-116.

147.     Ow JR, et al. (2014) In Taneja, R. (ed.[PMID: hlh Transcription Factors in Development and Disease, Vo]

148.     Zhang C, et al. Bioinformatics and biology insights.2015;9(Suppl 1):47-52.[PMID: 26819552]